IL_8VSA_080

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_080 not in the Motif Atlas

Homologous match to IL_4WF9_005

Geometric discrepancy: 0.357

The information below is about IL_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|134
8VSA|1|23S|U|135
8VSA|1|23S|G|136
*
8VSA|1|23S|C|143
8VSA|1|23S|A|144
8VSA|1|23S|C|145

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L23

50S ribosomal protein L23