IL_8VSA_111

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8VSA|1|23S|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_111 not in the Motif Atlas

Homologous match to IL_4WF9_038

Geometric discrepancy: 0.1965

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8VSA|1|23S|G|1011
8VSA|1|23S|U|1012
8VSA|1|23S|C|1013
*
8VSA|1|23S|G|1149
8VSA|1|23S|C|1150

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L13

50S ribosomal protein L13

Chain L20

50S ribosomal protein L20