IL_8VSA_118

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

8VSA|1|23S|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_118 not in the Motif Atlas

Geometric match to IL_1G1X_002

Geometric discrepancy: 0.1907

The information below is about IL_1G1X_002

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8VSA|1|23S|G|1087
8VSA|1|23S|A|1088
8VSA|1|23S|A|1089
8VSA|1|23S|A|1090
*
8VSA|1|23S|U|1101
8VSA|1|23S|C|1102

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L10

50S ribosomal protein L10

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36