IL_8VSA_120

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8VSA|1|23S|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_120 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.1507

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8VSA|1|23S|G|1202
8VSA|1|23S|U|1203
8VSA|1|23S|A|1204
8VSA|1|23S|A|1205
8VSA|1|23S|G|1206
*
8VSA|1|23S|U|1240
8VSA|1|23S|A|1241
8VSA|1|23S|U|1242
8VSA|1|23S|C|1243

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L15

50S ribosomal protein L15