IL_8VSA_122

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_122 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1139

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8VSA|1|23S|A|1262
8VSA|1|23S|U|1263
8VSA|1|23S|A|1264
8VSA|1|23S|A|1265
8VSA|1|23S|G|1266
8VSA|1|23S|U|1267
8VSA|1|23S|A|1268
8VSA|1|23S|A|1269
*
8VSA|1|23S|U|2011
8VSA|1|23S|G|2012
8VSA|1|23S|A|2013
8VSA|1|23S|A|2014
8VSA|1|23S|A|2015
8VSA|1|23S|U|2016
8VSA|1|23S|U|2017

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L04

50S ribosomal protein L4

Chain L22

50S ribosomal protein L22

Chain L32

50S ribosomal protein L32