IL_8VSA_137

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_137 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0931

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8VSA|1|23S|G|1651
8VSA|1|23S|A|1652
8VSA|1|23S|G|1653
8VSA|1|23S|A|1654
8VSA|1|23S|A|1655
8VSA|1|23S|C|1656
*
8VSA|1|23S|G|2004
8VSA|1|23S|A|2005
8VSA|1|23S|C|2006

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L17

Large ribosomal subunit protein bL17