IL_8VSA_160

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGAUGUGUAGGAUAGG*CCCUUUAA

Length

25 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|U|2105
8VSA|1|23S|U|2106
8VSA|1|23S|G|2107
8VSA|1|23S|A|2108
8VSA|1|23S|U|2109
8VSA|1|23S|G|2110
8VSA|1|23S|U|2111
8VSA|1|23S|G|2112
8VSA|1|23S|U|2113
8VSA|1|23S|A|2114
8VSA|1|23S|G|2115
8VSA|1|23S|G|2116
8VSA|1|23S|A|2117
8VSA|1|23S|U|2118
8VSA|1|23S|A|2119
8VSA|1|23S|G|2120
8VSA|1|23S|G|2121
*
8VSA|1|23S|C|2177
8VSA|1|23S|C|2178
8VSA|1|23S|C|2179
8VSA|1|23S|U|2180
8VSA|1|23S|U|2181
8VSA|1|23S|U|2182
8VSA|1|23S|A|2183
8VSA|1|23S|A|2184

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1