IL_8VSA_162

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

8VSA|1|23S|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|2124
8VSA|1|23S|G|2125
8VSA|1|23S|A|2126
8VSA|1|23S|G|2127
*
8VSA|1|23S|C|2161
8VSA|1|23S|G|2162
8VSA|1|23S|A|2163
8VSA|1|23S|C|2164
8VSA|1|23S|C|2165
8VSA|1|23S|U|2166
8VSA|1|23S|U|2167
8VSA|1|23S|G|2168
8VSA|1|23S|A|2169
8VSA|1|23S|A|2170
8VSA|1|23S|A|2171
8VSA|1|23S|U|2172
8VSA|1|23S|A|2173
8VSA|1|23S|C|2174

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1