IL_8VSA_167

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_167 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.1544

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VSA|1|23S|C|2350
8VSA|1|23S|G|2351
8VSA|1|23S|A|2352
8VSA|1|23S|G|2353
*
8VSA|1|23S|C|2364
8VSA|1|23S|G|2365
8VSA|1|23S|A|2366
8VSA|1|23S|G|2367

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L18

50S ribosomal protein L18

Chain L27

50S ribosomal protein L27

Chain L35

50S ribosomal protein L35