IL_8VSA_175

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8VSA|1|23S|G|2576, 8VSA|1|23S|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_175 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1679

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

8VSA|1|23S|C|2510
8VSA|1|23S|U|2511
8VSA|1|23S|C|2512
*
8VSA|1|23S|G|2574
8VSA|1|23S|C|2575
8VSA|1|23S|G|2576
8VSA|1|23S|A|2577
8VSA|1|23S|G|2578

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain L03

50S ribosomal protein L3

Chain L32

50S ribosomal protein L32