IL_8VSA_195

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUU,AAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_195 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2059

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8VSA|1|TMRN|A|25
8VSA|1|TMRN|U|26
8VSA|1|TMRN|U|27
*
8VSA|1|TMRN|A|326
8VSA|1|TMRN|A|327
8VSA|1|TMRN|U|328

Current chains

Chain TMRN

TMRN

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA

Chain L05

50S ribosomal protein L5

Chain S13

30S ribosomal protein S13