IL_8VSA_208

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

8VSA|1|16S|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_208 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.2685

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8VSA|1|16S|U|249
8VSA|1|16S|A|250
8VSA|1|16S|G|251
8VSA|1|16S|U|252
*
8VSA|1|16S|A|274
8VSA|1|16S|G|275

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S17

Small ribosomal subunit protein uS17