IL_8VSA_211

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAAAUCC*GAACUGC

Length

16 nucleotides

Bulged bases

8VSA|1|16S|U|632

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|16S|G|604
8VSA|1|16S|U|605
8VSA|1|16S|G|606
8VSA|1|16S|A|607
8VSA|1|16S|A|608
8VSA|1|16S|A|609
8VSA|1|16S|U|610
8VSA|1|16S|C|611
8VSA|1|16S|C|612
*
8VSA|1|16S|G|628
8VSA|1|16S|A|629
8VSA|1|16S|A|630
8VSA|1|16S|C|631
8VSA|1|16S|U|632
8VSA|1|16S|G|633
8VSA|1|16S|C|634

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S04

30S ribosomal protein S4

Chain S08

30S ribosomal protein S8

Chain S16

30S ribosomal protein S16

Chain S17

Small ribosomal subunit protein uS17