IL_8VSA_212
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8VSA|1|16S|C|1054
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_212 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1967
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_82453.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VSA|1|16S|U|1052
8VSA|1|16S|G|1053
8VSA|1|16S|C|1054
8VSA|1|16S|A|1055
8VSA|1|16S|U|1056
*
8VSA|1|16S|A|1204
8VSA|1|16S|U|1205
8VSA|1|16S|G|1206
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain ATRN
- Transfer RNA; tRNA
- Chain S03
- 30S ribosomal protein S3
- Chain S10
- 30S ribosomal protein S10
- Chain S14
- Small ribosomal subunit protein uS14
- Chain TMRN
- Transfer-messenger RNA; tmRNA
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