IL_8VSA_217

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

8VSA|1|23S|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_217 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.2927

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8VSA|1|23S|U|1467
8VSA|1|23S|U|1468
8VSA|1|23S|A|1469
8VSA|1|23S|A|1470
8VSA|1|23S|G|1471
*
8VSA|1|23S|U|1520
8VSA|1|23S|G|1521
8VSA|1|23S|A|1522
8VSA|1|23S|U|1523
8VSA|1|23S|G|1524
8VSA|1|23S|A|1525

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains