IL_8VSA_217
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUAAG*UGAUGA
- Length
- 11 nucleotides
- Bulged bases
- 8VSA|1|23S|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VSA_217 not in the Motif Atlas
- Geometric match to IL_4V9F_056
- Geometric discrepancy: 0.2927
- The information below is about IL_4V9F_056
- Detailed Annotation
- tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_62654.1
- Basepair signature
- cWW-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8VSA|1|23S|U|1467
8VSA|1|23S|U|1468
8VSA|1|23S|A|1469
8VSA|1|23S|A|1470
8VSA|1|23S|G|1471
*
8VSA|1|23S|U|1520
8VSA|1|23S|G|1521
8VSA|1|23S|A|1522
8VSA|1|23S|U|1523
8VSA|1|23S|G|1524
8VSA|1|23S|A|1525
Current chains
- Chain 23S
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: