IL_8VSA_219

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VSA_219 not in the Motif Atlas

Geometric match to IL_8VTW_065

Geometric discrepancy: 0.1159

The information below is about IL_8VTW_065

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8VSA|1|23S|G|1666
8VSA|1|23S|G|1667
8VSA|1|23S|A|1668
8VSA|1|23S|A|1669
*
8VSA|1|23S|U|1993
8VSA|1|23S|C|1994

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L14

50S ribosomal protein L14