IL_8VSA_229

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUUGAAGU*AUGGAGC

Length

17 nucleotides

Bulged bases

8VSA|1|23S|U|2132, 8VSA|1|23S|G|2157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VSA|1|23S|G|2128
8VSA|1|23S|C|2129
8VSA|1|23S|U|2130
8VSA|1|23S|U|2131
8VSA|1|23S|U|2132
8VSA|1|23S|G|2133
8VSA|1|23S|A|2134
8VSA|1|23S|A|2135
8VSA|1|23S|G|2136
8VSA|1|23S|U|2137
*
8VSA|1|23S|A|2154
8VSA|1|23S|U|2155
8VSA|1|23S|G|2156
8VSA|1|23S|G|2157
8VSA|1|23S|A|2158
8VSA|1|23S|G|2159
8VSA|1|23S|C|2160

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1