IL_8VTU_044

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

8VTU|1|1A|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_044 not in the Motif Atlas

Homologous match to IL_8VTW_045

Geometric discrepancy: 0.0451

The information below is about IL_8VTW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.3

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8VTU|1|1A|C|1202
8VTU|1|1A|G|1203
8VTU|1|1A|A|1204
8VTU|1|1A|U|1205
8VTU|1|1A|G|1206
*
8VTU|1|1A|U|1240
8VTU|1|1A|A|1241
8VTU|1|1A|A|1242
8VTU|1|1A|G|1243

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15