IL_8VTU_093
3D structure
- PDB id
- 8VTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTU_093 not in the Motif Atlas
- Homologous match to IL_8VTW_094
- Geometric discrepancy: 0.0461
- The information below is about IL_8VTW_094
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8VTU|1|1A|C|2466
8VTU|1|1A|C|2467
8VTU|1|1A|G|2468
8VTU|1|1A|A|2469
8VTU|1|1A|G|2470
*
8VTU|1|1A|C|2480
8VTU|1|1A|G|2481
8VTU|1|1A|G|2482
8VTU|1|1A|C|2483
8VTU|1|1A|G|2484
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1w
- Transfer RNA; tRNA
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