IL_8VTU_101

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_101 not in the Motif Atlas

Homologous match to IL_8VTW_102

Geometric discrepancy: 0.0537

The information below is about IL_8VTW_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.3

Basepair signature

cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R

Number of instances in this motif group

5

Unit IDs

8VTU|1|1A|C|2652
8VTU|1|1A|U|2653
8VTU|1|1A|A|2654
8VTU|1|1A|G|2655
8VTU|1|1A|U|2656
8VTU|1|1A|A|2657
8VTU|1|1A|C|2658
*
8VTU|1|1A|G|2663
8VTU|1|1A|G|2664
8VTU|1|1A|A|2665
8VTU|1|1A|C|2666
8VTU|1|1A|C|2667
8VTU|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6