IL_8VTU_231

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

8VTU|1|2A|C|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTU_231 not in the Motif Atlas

Homologous match to IL_8VTW_060

Geometric discrepancy: 0.2909

The information below is about IL_8VTW_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85615.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

8VTU|1|2A|U|1481
8VTU|1|2A|G|1482
*
8VTU|1|2A|C|1506
8VTU|1|2A|A|1507
8VTU|1|2A|A|1508
8VTU|1|2A|C|1509
8VTU|1|2A|A|1509|||A
8VTU|1|2A|A|1509|||B
8VTU|1|2A|G|1510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains