IL_8VTV_190

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8VTV|1|2A|U|504, 8VTV|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTV_190 not in the Motif Atlas

Homologous match to IL_8VTW_013

Geometric discrepancy: 0.0486

The information below is about IL_8VTW_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8VTV|1|2A|G|481
8VTV|1|2A|A|482
8VTV|1|2A|A|483
8VTV|1|2A|C|484
*
8VTV|1|2A|G|496
8VTV|1|2A|A|497
8VTV|1|2A|G|498
8VTV|1|2A|U|499
8VTV|1|2A|G|500
8VTV|1|2A|A|501
8VTV|1|2A|A|502
8VTV|1|2A|A|503
8VTV|1|2A|U|504
8VTV|1|2A|A|505
8VTV|1|2A|G|506
8VTV|1|2A|A|507
8VTV|1|2A|G|508
8VTV|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24