3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_203 not in the Motif Atlas
Homologous match to IL_8VTW_026
Geometric discrepancy: 0.0825
The information below is about IL_8VTW_026
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.3
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8VTV|1|2A|U|858
8VTV|1|2A|G|859
8VTV|1|2A|U|860
8VTV|1|2A|A|861
8VTV|1|2A|G|862
*
8VTV|1|2A|C|915
8VTV|1|2A|G|916
8VTV|1|2A|A|917
8VTV|1|2A|A|918
8VTV|1|2A|G|919

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 2B
5S ribosomal RNA; 5S rRNA
Chain 2Q
50S ribosomal protein L16

Coloring options:


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