3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
8VTV|1|2A|A|1460
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_231 not in the Motif Atlas
Homologous match to IL_8VTW_058
Geometric discrepancy: 0.195
The information below is about IL_8VTW_058
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

8VTV|1|2A|C|1450|||A
8VTV|1|2A|C|1451
*
8VTV|1|2A|G|1459
8VTV|1|2A|A|1460
8VTV|1|2A|G|1461

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2R
50S ribosomal protein L17

Coloring options:


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