3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
8VTV|1|2A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_240 not in the Motif Atlas
Homologous match to IL_8VTW_067
Geometric discrepancy: 0.1104
The information below is about IL_8VTW_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65969.4
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

8VTV|1|2A|C|1686
8VTV|1|2A|G|1687
8VTV|1|2A|U|1688
8VTV|1|2A|A|1689
8VTV|1|2A|A|1690
8VTV|1|2A|C|1691
*
8VTV|1|2A|G|1696
8VTV|1|2A|G|1697
8VTV|1|2A|A|1698
8VTV|1|2A|G|1699
8VTV|1|2A|A|1700
8VTV|1|2A|A|1701
8VTV|1|2A|G|1702

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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