3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8VTV_305 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.0918
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

8VTV|1|2a|G|409
8VTV|1|2a|G|410
8VTV|1|2a|A|411
8VTV|1|2a|A|412
8VTV|1|2a|G|413
8VTV|1|2a|A|414
8VTV|1|2a|A|415
8VTV|1|2a|G|416
*
8VTV|1|2a|U|427
8VTV|1|2a|G|428
8VTV|1|2a|U|429
8VTV|1|2a|A|430
8VTV|1|2a|A|431
8VTV|1|2a|A|432
8VTV|1|2a|C|433

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2d
30S ribosomal protein S4

Coloring options:


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