IL_8VTW_046

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8VTW|1|1A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

8VTW|1|1A|C|1208
8VTW|1|1A|G|1209
8VTW|1|1A|A|1210
8VTW|1|1A|U|1211
8VTW|1|1A|G|1212
8VTW|1|1A|A|1213
8VTW|1|1A|A|1214
8VTW|1|1A|G|1215
*
8VTW|1|1A|U|1234
8VTW|1|1A|G|1235
8VTW|1|1A|G|1236
8VTW|1|1A|A|1237
8VTW|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20