IL_8VTW_195

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_195 not in the Motif Atlas

Homologous match to IL_8VTW_021

Geometric discrepancy: 0.0384

The information below is about IL_8VTW_021

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8VTW|1|2A|G|738
8VTW|1|2A|G|739
8VTW|1|2A|U|740
8VTW|1|2A|G|741
*
8VTW|1|2A|C|756
8VTW|1|2A|U|757
8VTW|1|2A|C|758

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains