IL_8VTW_202

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_202 not in the Motif Atlas

Homologous match to IL_8VTW_028

Geometric discrepancy: 0.0486

The information below is about IL_8VTW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02509.3

Basepair signature

cWW-cWS-cWW-cWW-R-cSH-tWH-R

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|G|864
8VTW|1|2A|C|865
8VTW|1|2A|A|866
8VTW|1|2A|C|867
8VTW|1|2A|U|868
*
8VTW|1|2A|A|909
8VTW|1|2A|A|910
8VTW|1|2A|A|911
8VTW|1|2A|C|912

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25