IL_8VTW_242

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

8VTW|1|2A|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_242 not in the Motif Atlas

Homologous match to IL_8VTW_070

Geometric discrepancy: 0.0343

The information below is about IL_8VTW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8VTW|1|2A|C|1837
8VTW|1|2A|C|1838
8VTW|1|2A|G|1839
8VTW|1|2A|G|1840
*
8VTW|1|2A|C|1902
8VTW|1|2A|G|1903

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA