IL_8VTW_275

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_275 not in the Motif Atlas

Homologous match to IL_8VTW_102

Geometric discrepancy: 0.0594

The information below is about IL_8VTW_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.3

Basepair signature

cWW-cHS-tWH-cWW-R-L-cWW-tHS-L-R

Number of instances in this motif group

5

Unit IDs

8VTW|1|2A|C|2652
8VTW|1|2A|U|2653
8VTW|1|2A|A|2654
8VTW|1|2A|G|2655
8VTW|1|2A|U|2656
8VTW|1|2A|A|2657
8VTW|1|2A|C|2658
*
8VTW|1|2A|G|2663
8VTW|1|2A|G|2664
8VTW|1|2A|A|2665
8VTW|1|2A|C|2666
8VTW|1|2A|C|2667
8VTW|1|2A|G|2668

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6