IL_8VTW_342

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_342 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.0952

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTW|1|2a|G|1401
8VTW|1|2a|4OC|1402
8VTW|1|2a|C|1403
8VTW|1|2a|5MC|1404
8VTW|1|2a|G|1405
*
8VTW|1|2a|C|1496
8VTW|1|2a|G|1497
8VTW|1|2a|UR3|1498
8VTW|1|2a|A|1499
8VTW|1|2a|A|1500
8VTW|1|2a|C|1501

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2y

Ribosome-associated inhibitor A