IL_8VTW_353

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTW_353 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1025

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8VTW|1|1a|C|1259
8VTW|1|1a|C|1260
8VTW|1|1a|A|1261
8VTW|1|1a|C|1262
*
8VTW|1|1a|G|1273
8VTW|1|1a|G|1274
8VTW|1|1a|A|1275
8VTW|1|1a|G|1276

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx