IL_8VTX_013
3D structure
- PDB id
- 8VTX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 8VTX|1|1A|U|504, 8VTX|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VTX_013 not in the Motif Atlas
- Homologous match to IL_8VTW_013
- Geometric discrepancy: 0.0345
- The information below is about IL_8VTW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8VTX|1|1A|G|481
8VTX|1|1A|A|482
8VTX|1|1A|A|483
8VTX|1|1A|C|484
*
8VTX|1|1A|G|496
8VTX|1|1A|A|497
8VTX|1|1A|G|498
8VTX|1|1A|U|499
8VTX|1|1A|G|500
8VTX|1|1A|A|501
8VTX|1|1A|A|502
8VTX|1|1A|A|503
8VTX|1|1A|U|504
8VTX|1|1A|A|505
8VTX|1|1A|G|506
8VTX|1|1A|A|507
8VTX|1|1A|G|508
8VTX|1|1A|C|509
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
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