IL_8VTX_069

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8VTX|1|1A|G|1801, 8VTX|1|1A|G|1816, 8VTX|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTX_069 not in the Motif Atlas

Homologous match to IL_8VTW_069

Geometric discrepancy: 0.0203

The information below is about IL_8VTW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.4

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VTX|1|1A|U|1798
8VTX|1|1A|G|1799
8VTX|1|1A|C|1800
8VTX|1|1A|G|1801
8VTX|1|1A|A|1802
8VTX|1|1A|A|1803
8VTX|1|1A|C|1804
*
8VTX|1|1A|G|1813
8VTX|1|1A|G|1814
8VTX|1|1A|A|1815
8VTX|1|1A|G|1816
8VTX|1|1A|G|1817
8VTX|1|1A|U|1818
8VTX|1|1A|A|1819
8VTX|1|1A|U|1820
8VTX|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA