IL_8VTX_363

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAGCCUGUGAACCC*GGGGGAGGCGCCGGUGAAAUAC

Length

37 nucleotides

Bulged bases

8VTX|1|2A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTX|1|2A|G|2124
8VTX|1|2A|G|2125
8VTX|1|2A|A|2126
8VTX|1|2A|G|2127
8VTX|1|2A|C|2128
8VTX|1|2A|C|2129
8VTX|1|2A|U|2130
8VTX|1|2A|G|2131
8VTX|1|2A|U|2132
8VTX|1|2A|G|2133
8VTX|1|2A|A|2134
8VTX|1|2A|A|2135
8VTX|1|2A|C|2136
8VTX|1|2A|C|2137
8VTX|1|2A|C|2138
*
8VTX|1|2A|G|2153
8VTX|1|2A|G|2154
8VTX|1|2A|G|2155
8VTX|1|2A|G|2156
8VTX|1|2A|G|2157
8VTX|1|2A|A|2158
8VTX|1|2A|G|2159
8VTX|1|2A|G|2160
8VTX|1|2A|C|2161
8VTX|1|2A|G|2162
8VTX|1|2A|C|2163
8VTX|1|2A|C|2164
8VTX|1|2A|G|2165
8VTX|1|2A|G|2166
8VTX|1|2A|U|2167
8VTX|1|2A|G|2168
8VTX|1|2A|A|2169
8VTX|1|2A|A|2170
8VTX|1|2A|A|2171
8VTX|1|2A|U|2172
8VTX|1|2A|A|2173
8VTX|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA