IL_8VTY_024

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

8VTY|1|1A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_024 not in the Motif Atlas

Homologous match to IL_8VTW_024

Geometric discrepancy: 0.0395

The information below is about IL_8VTW_024

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8VTY|1|1A|C|844
8VTY|1|1A|G|845
8VTY|1|1A|C|846
*
8VTY|1|1A|G|931
8VTY|1|1A|G|932
8VTY|1|1A|A|933
8VTY|1|1A|G|934

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L30