IL_8VTY_046

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8VTY|1|1A|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_046 not in the Motif Atlas

Homologous match to IL_8VTW_047

Geometric discrepancy: 0.0392

The information below is about IL_8VTW_047

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8VTY|1|1A|G|1219
8VTY|1|1A|A|1220
8VTY|1|1A|C|1221
*
8VTY|1|1A|G|1229
8VTY|1|1A|C|1230

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1V

50S ribosomal protein L21