IL_8VTY_085

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

8VTY|1|1A|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_085 not in the Motif Atlas

Homologous match to IL_8VTW_086

Geometric discrepancy: 0.1814

The information below is about IL_8VTW_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTY|1|1A|C|2129
8VTY|1|1A|U|2130
8VTY|1|1A|G|2131
8VTY|1|1A|U|2132
8VTY|1|1A|G|2133
8VTY|1|1A|A|2134
8VTY|1|1A|A|2135
8VTY|1|1A|C|2136
*
8VTY|1|1A|G|2155
8VTY|1|1A|G|2156
8VTY|1|1A|G|2157
8VTY|1|1A|A|2158
8VTY|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains