IL_8VTY_093

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8VTY|1|1A|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_093 not in the Motif Atlas

Homologous match to IL_8VTW_093

Geometric discrepancy: 0.0341

The information below is about IL_8VTW_093

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8VTY|1|1A|A|2459
8VTY|1|1A|U|2460
8VTY|1|1A|C|2461
*
8VTY|1|1A|G|2489
8VTY|1|1A|G|2490
8VTY|1|1A|U|2491
8VTY|1|1A|U|2492
8VTY|1|1A|U|2493

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16