IL_8VTY_184

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

8VTY|1|2A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_184 not in the Motif Atlas

Homologous match to IL_8VTW_010

Geometric discrepancy: 0.1091

The information below is about IL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99646.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8VTY|1|2A|C|280
8VTY|1|2A|G|281
8VTY|1|2A|A|282
8VTY|1|2A|A|283
8VTY|1|2A|U|284
*
8VTY|1|2A|A|357
8VTY|1|2A|U|358
8VTY|1|2A|A|359
8VTY|1|2A|G|360

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains