IL_8VTY_216

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAGAGUGCGUAAUAGCUCAC

Length

27 nucleotides

Bulged bases

8VTY|1|2A|U|1083, 8VTY|1|2A|A|1088, 8VTY|1|2A|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTY|1|2A|G|1055
8VTY|1|2A|G|1056
8VTY|1|2A|A|1057
*
8VTY|1|2A|U|1081
8VTY|1|2A|U|1082
8VTY|1|2A|U|1083
8VTY|1|2A|A|1084
8VTY|1|2A|A|1085
8VTY|1|2A|A|1086
8VTY|1|2A|G|1087
8VTY|1|2A|A|1088
8VTY|1|2A|G|1089
8VTY|1|2A|U|1090
8VTY|1|2A|G|1091
8VTY|1|2A|C|1092
8VTY|1|2A|G|1093
8VTY|1|2A|U|1094
8VTY|1|2A|A|1095
8VTY|1|2A|A|1096
8VTY|1|2A|U|1097
8VTY|1|2A|A|1098
8VTY|1|2A|G|1099
8VTY|1|2A|C|1100
8VTY|1|2A|U|1101
8VTY|1|2A|C|1102
8VTY|1|2A|A|1103
8VTY|1|2A|C|1104

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2Q

50S ribosomal protein L16