IL_8VTY_242

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8VTY|1|2A|G|1801, 8VTY|1|2A|G|1816, 8VTY|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_242 not in the Motif Atlas

Homologous match to IL_8VTW_069

Geometric discrepancy: 0.0386

The information below is about IL_8VTW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.4

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8VTY|1|2A|U|1798
8VTY|1|2A|G|1799
8VTY|1|2A|C|1800
8VTY|1|2A|G|1801
8VTY|1|2A|A|1802
8VTY|1|2A|A|1803
8VTY|1|2A|C|1804
*
8VTY|1|2A|G|1813
8VTY|1|2A|G|1814
8VTY|1|2A|A|1815
8VTY|1|2A|G|1816
8VTY|1|2A|G|1817
8VTY|1|2A|U|1818
8VTY|1|2A|A|1819
8VTY|1|2A|U|1820
8VTY|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA