IL_8VTY_259

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_259 not in the Motif Atlas

Homologous match to IL_8VTW_085

Geometric discrepancy: 0.242

The information below is about IL_8VTW_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTY|1|2A|G|2124
8VTY|1|2A|G|2125
8VTY|1|2A|A|2126
8VTY|1|2A|G|2127
*
8VTY|1|2A|C|2161
8VTY|1|2A|G|2162
8VTY|1|2A|C|2163
8VTY|1|2A|C|2164
8VTY|1|2A|G|2165
8VTY|1|2A|G|2166
8VTY|1|2A|U|2167
8VTY|1|2A|G|2168
8VTY|1|2A|A|2169
8VTY|1|2A|A|2170
8VTY|1|2A|A|2171
8VTY|1|2A|U|2172
8VTY|1|2A|A|2173
8VTY|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains