IL_8VTY_305

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_305 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.111

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8VTY|1|2a|G|409
8VTY|1|2a|G|410
8VTY|1|2a|A|411
8VTY|1|2a|A|412
8VTY|1|2a|G|413
8VTY|1|2a|A|414
8VTY|1|2a|A|415
8VTY|1|2a|G|416
*
8VTY|1|2a|U|427
8VTY|1|2a|G|428
8VTY|1|2a|U|429
8VTY|1|2a|A|430
8VTY|1|2a|A|431
8VTY|1|2a|A|432
8VTY|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4