IL_8VTY_347

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VTY_347 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0907

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.6

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8VTY|1|2a|C|1431
8VTY|1|2a|G|1432
8VTY|1|2a|A|1433
8VTY|1|2a|A|1434
8VTY|1|2a|G|1435
*
8VTY|1|2a|C|1466
8VTY|1|2a|G|1467
8VTY|1|2a|A|1468
8VTY|1|2a|G|1469

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2T

50S ribosomal protein L19

Chain 2t

30S ribosomal protein S20