IL_8VTY_362

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAGACAGCC*GGUCGAG

Length

18 nucleotides

Bulged bases

8VTY|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VTY|1|2A|C|1043
8VTY|1|2A|G|1044
8VTY|1|2A|A|1045
8VTY|1|2A|A|1046
8VTY|1|2A|G|1047
8VTY|1|2A|A|1048
8VTY|1|2A|C|1049
8VTY|1|2A|A|1050
8VTY|1|2A|G|1051
8VTY|1|2A|C|1052
8VTY|1|2A|C|1053
*
8VTY|1|2A|G|1106
8VTY|1|2A|G|1107
8VTY|1|2A|U|1108
8VTY|1|2A|C|1109
8VTY|1|2A|G|1110
8VTY|1|2A|A|1111
8VTY|1|2A|G|1112

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6