IL_8VUP_009

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_009 not in the Motif Atlas

Geometric match to IL_4V9F_011

Geometric discrepancy: 0.3319

The information below is about IL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8VUP|1|1|C|274
8VUP|1|1|C|275
8VUP|1|1|U|276
8VUP|1|1|G|277
8VUP|1|1|A|278
8VUP|1|1|A|279
8VUP|1|1|U|280
8VUP|1|1|C|281
*
8VUP|1|1|G|359
8VUP|1|1|U|360
8VUP|1|1|G|361
8VUP|1|1|A|362
8VUP|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains