IL_8VUP_028
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCA*UG
- Length
- 5 nucleotides
- Bulged bases
- 8VUP|1|1|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8VUP_028 not in the Motif Atlas
- Geometric match to IL_7A0S_032
- Geometric discrepancy: 0.1343
- The information below is about IL_7A0S_032
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8VUP|1|1|C|994
8VUP|1|1|C|995
8VUP|1|1|A|996
*
8VUP|1|1|U|1159
8VUP|1|1|G|1160
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L13
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
Coloring options: