IL_8VUP_039

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8VUP|1|1|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VUP_039 not in the Motif Atlas

Geometric match to IL_5J7L_287

Geometric discrepancy: 0.1527

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8VUP|1|1|G|1202
8VUP|1|1|U|1203
8VUP|1|1|A|1204
8VUP|1|1|A|1205
8VUP|1|1|G|1206
*
8VUP|1|1|U|1240
8VUP|1|1|A|1241
8VUP|1|1|U|1242
8VUP|1|1|C|1243

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15